Fall weather calls for pumpkin cheesecake muffins, and this recipe beats any bakery muffin! These muffins are easy to make, and the creamy cheese filling takes them to another level. The muffins join our pumpkin cheesecake bars as a new family favorite!

We love recreating fall favorites. These muffins, along with our easy pumpkin roll cake and homemade pumpkin pie latte, are our favorite fall recipes. 

A stack of 3 pumpkin muffins.

This fall, we tried the Starbucks pumpkin muffin, and I now know why it’s a seasonal favorite! These are the muffin version of the iconic pumpkin swirl bread!

As soon as I had a taste, I knew we had to recreate it, but better! The muffins are soft with a pumpkin pie flavor, but the cream cheese filling makes these the best pumpkin muffins. 

So, just make these yourself and enjoy them at a fraction of the cost; you’ll thank me once you try them.

The cut open pumpkin muffin showing the cheesecake center.

Why You’ll Love This Recipe

The name itself should entice you to try making the muffins. If it doesn’t, here are other reasons why you should give the recipe a try.

  • Save your money. The Starbucks muffin is so expensive, and you can get an entire batch that is close to the price of one!
  • Easy baking. These cupcakes are so easy to make, and they look so beautiful!
  • Incredible flavor. The combination of cheesecake flavor and pumpkin pie is unbeatable.

Ingredients for Pumpkin Cheesecake Muffins

  • Cream cheese filling – our homemade cheesecake filling is made with full-fat cream cheese, sugar, and vanilla. Similar to the base for our simple cheesecake recipe.
  • Oil – a neutral oil is key in this muffin recipe.
  • Sugar – we use a combination of cane sugar and brown sugar for the best flavor.
  • Eggs – large eggs at room temperature are key for the perfect batter.
  • Pumpkin puree – canned pumpkin puree is perfect for this recipe.
  • Flour – we use all-purpose flour, but you can even substitute gluten-free flour. 
  • Spices – a combination of pumpkin pie spice and cinnamon for the perfect fall flavor.
  • Baking powder & baking soda – our baking agents help these muffins rise and remain fluffy.
  • Streusel – our homemade streusel is what elevates these muffins. The mix of brown sugar and cinnamon brings an incredible flavor.

See the recipe card below for a full list of ingredients and quantities.

All the ingredients for pumpkin muffins in glass bowls.

Delicious Variations

  • Add nuts: Take your muffins to the next level by loading them with pistachios, walnuts, and pecans. 
  • Create a swirl: Use a toothpick to create a pretty design and have your very own cream cheese swirl muffins. 
  • Add chocolate: If you love all things chocolate, like our chocolate banana muffins, you can add chocolate chip morsels to the batter.

How to Make Pumpkin Cheesecake Muffins 

A glass bowl with t he cheesecake filling.
  1. Make cream cheese filling. In a large bowl, beat the cream cheese with a hand mixer. Beat in the sugar and vanilla until smooth.
All the wet ingredients for pumpkin muffins in a glass bowl.

2. Wet ingredients. In a medium bowl, beat the oil, sugars, eggs, pumpkin puree, vanilla, and milk, and beat on low speed until combined.

All the dry ingredients in a glass bowl.

3. Dry ingredients. Whisk the flour, pumpkin spice, cinnamon, baking powder, baking soda, and salt in a separate bowl.

A glass bowl with the dry ingredients being added to the wet ingredients.

4. Combine. Fold the dry ingredients into the wet batter and beat until combined.

A muffin pan with all the muffin batter evenly dispersed and showing the cheesecake filling on top.

5. Pour the muffin batter. Fill each muffin liner in the muffin pan until about ½ way filled. Then, add the sweet cream cheese filling to the center of each muffin and top with the remaining batter.

The muffin pan with the streusel topping on top.

6. Bake muffins. Top each muffin with brown sugar streusel. Bake the muffins in the oven at 375°F for 22-24 minutes or until the muffins are golden.

Expert Tips: 

  • Correct temperature. Make sure all the ingredients are at room temperature for the perfect muffins. Cream cheese, eggs, and milk should all be at room temperature.
  • Don’t be shy with the toppings. It may seem like a lot of cream cheese mixture or a lot of streusel, but it’s not too much! We recommend using every last crumb!

Recipe FAQs

Can pumpkin puree be made from scratch?

Yes, you can use steamed pumpkin and make the puree from scratch. There are a lot of canned pumpkin purees made with clean ingredients that will save you those extra steps!

Do these muffins taste like Starbucks pumpkin muffins?

We think these muffins are incredibly similar but better because of the streusel that the Starbucks pastry doesn’t have!

Can these muffins be made without the streusel?

These muffins can be made with the streusel crumb topping. You can dust the muffins with powdered sugar for an aesthetically pleasing if serving guests.

A muffin pan with the baked pumpkin muffins.

Store & Reheat 

  • Storage. If you can avoid finishing all the muffins on the first day, you can keep leftovers in the refrigerator for up to 3 days.
  • Freeze. We don’t recommend freezing these muffins because of the soft cheesecake filling. 

If you tried this pumpkin cream cheese muffins or any other recipe on my website, please leave a star rating and let me know how it went in the comments below – we appreciate it!

Pumpkin Cheesecake Muffins

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5 from 3 votes
These pumpkin cheesecake muffins are the perfect fall dessert that you can make at home. Shockingly easy to make at home, you’ll never need to buy these muffins at a coffee shop again!
Prep Time: 10 minutes
Cook Time: 25 minutes
Total Time: 35 minutes
Servings: 12

Ingredients

cream cheese filling:

  • 6 ounces cream cheese room temperature
  • 1/4 cup granulated sugar
  • ½ teaspoon vanilla extract

pumpkin muffins

  • 1/2 cup oil vegetable, canola or extra light virgin
  • 1/2 cup granulated sugar
  • 1/2 cup brown sugar packed
  • 2 large eggs room temperature
  • 1 cup pumpkin puree
  • 1 tsp vanilla extract
  • 1/4 cup whole milk room temperature
  • 1 3/4 all-purpose flour
  • 2 tsp pumpkin spice
  • 2 tsp ground cinnamon
  • 11/2 tsp baking powder
  • 1 tsp baking soda
  • ½ tsp salt

streusel:

  • 1/3 cup all-purpose flour
  • ¼ cup brown sugar lightly packed
  • 1 tsp ground cinnamon
  • 3 Tbsp unsalted butter cubed

Instructions

  • Preheat the oven to 375°F and line a 12-count muffin tin with paper liners.
  • Prepare cream cheese filling:
  • In a large mixing bowl, beat cream cheese until smooth. Add granulated sugar and vanilla, and beat again until combined; set mixture aside.
  • Prepare Muffins Batter:
  • In a medium bowl, add the oil, sugars, eggs, pumpkin puree, vanilla, and milk, and beat on low speed until combined.
  • Mix the flour, pumpkin spice, cinnamon, baking powder, baking soda, and salt in a separate bowl. Stir the dry ingredients into the wet batter to combine on a low-speed beat until everything is incorporated.
  • Divide the pumpkin batter among the muffin liners. Then, add the cream cheese mixture to the center of each muffin.
  • Prepare streusel:
  • Combine the flour, sugar, cinnamon, and butter until a crumbly mixture forms; you can do this with a fork.
  • Add the streusel over top of the muffin mixture.
  • Bake for 22-24 minutes or until the muffins are golden.
  • Serve and enjoy, friends.

Notes

  • Add nuts: Take your muffins to the next level by loading them with pistachios and pecans. 
  • Create a swirl: Use a toothpick to create a pretty design and have your very own cream cheese swirl muffins. 
  • Correct temperature. Make sure all the ingredients are at room temperature for the perfect muffins. Cream cheese, eggs, and milk should all be at room temperature.  
  • Don’t be shy with the toppings. It may seem like a lot of cheesecake filling or a lot of streusel, but it’s not too much! We recommend using every last crumb!
  • Storage. If you can keep from finishing all the muffins on the first day, keep leftovers  in the fridge for up to 3 days.
  • Freeze. We don’t recommend freezing these muffins because of the soft cheesecake filling. 
 

Nutrition

297kcal Calories33g Carbs3g Protein18g Fat6g Saturated Fat3g Polyunsaturated Fat8g Monounsaturated Fat0.2g Trans Fat50mg Cholesterol252mg Sodium292mg Potassium1g Fiber27g Sugar3505IU Vitamin A1mg Vitamin C129mg Calcium1mg Iron
Nutrition Facts
Pumpkin Cheesecake Muffins
Amount Per Serving
Calories 297 Calories from Fat 162
% Daily Value*
Fat 18g28%
Saturated Fat 6g38%
Trans Fat 0.2g
Polyunsaturated Fat 3g
Monounsaturated Fat 8g
Cholesterol 50mg17%
Sodium 252mg11%
Potassium 292mg8%
Carbohydrates 33g11%
Fiber 1g4%
Sugar 27g30%
Protein 3g6%
Vitamin A 3505IU70%
Vitamin C 1mg1%
Calcium 129mg13%
Iron 1mg6%
* Percent Daily Values are based on a 2000 calorie diet.
(The nutrition information provided is an estimate and will vary based on cooking methods and brands of ingredients used.)